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For RU wide service interruption see meldingen.ru.nl.

 

Service Interruptions


1433: fileserver peck upgrade

We are going to upgrade fileserver “peck” on Friday June 19th 2026. The plan is to do it early in the morning, but you may experience some issues after the upgrade as well. Rebooting the client computer may solve the problem in that case. Please keep an eye on this page to check whether the upgrade is completed or not. affected shares: microtraitrev drugsinaction redbackedshrike pocbiosafety huckmeta ghgurbanpond windows antibodies ash-pantanal bioturbationmw coacervatesguvs huckpresentations huckpublications velemapresentations azollazuiderveen doubleemul dynsign floatpluscombi brasil chopchopphosphatase ipm1 ivttoptimization mbneufy3 nobv nobvsloten22 tempsensdenit ditchemissions ecologiegeneral methanotrophufjf noneqsys seedrelease sutherlandcollaboration wallpaper ghgseasons palseq peprep qmorgchem seedvstransgm sh-peat-lake sludgeheteren snn5 devneuro mbneufy2 proteome thermal velemastudents eddychamber littleowl1 recoupmoor rfcourse sees rhenenazlem crnenvironment griend jcvi ac-dccircuit amsroof auksurvival ctincontext diopsysv1 gasfluxmw isis limno tracegasarchive wheatear mbccn1 artificialorganelles chickgrowth mafk oneplanet seasonalcnp mbconda coacervateliposomes dredgingmethane eppsensor flowfish henharrier liposomes mbneufy4 membranes microzoo smoothhomerange antolbodymass azollasoil ces2 cointroductiongm goshawk trait-biomimicry dcnadmin ebba12 heideplaggen limingharderwijk plovers selforganize aquacosm-mafau breda ces3 danishlakes ghgfishponds pocinstrument starvation westzaan ch4typha auger5 mocia proteinaggr sludge-depot velemapublications soillife carabidaebaarn digs diopsisvrande nadjapaper1 nonfluorsurfact pclakecarbon spruijtpresentations antollungtype bakkerforaging bodemlevengelre krvrgeneral mycoplasma ndl commvideo digsproject ecologieepe interact mafk-archief ooijinsects pocmisc pocpresentations sccm korevaarpublications butterflyexp1 ecologieaeeb insectnl methanemesosilk selfrepcoacervates typhaphragmites abiotfishship berendonck foodwebmw hamstersurv lci-restoration nioozout ringwearloss sargbonaire shipdrought tmpdirrepphos urbanbird amsbackup2 blackheaded dastestraid dietstarling dooddoetleven pocsafety turtledove ch4fluxthroughwaterhyacinth hoverfly korevaartheses krebssoup operonivtt quorumsense rockdustma synmetpath midgeaztom ces1 ecometabolism fieldedges21 goeree-plants hkgcycle hucktheses mpcoldmol3 ragfieldlabgm triploidyzbf chopchopreservoir coacervatecapsules crabbehaviour greatreedwarbler historywaterdata xraydata fmarapr2022 aeedfs adultzbf crnadaptation genbottlegm greylag1 insectnutrients ivtliposomes foctnov2022 cellfate chemcontrol eureversal ghgditches isospaarbekkens neogoniolithon vegwatertable sludgework greylag2 korevaarpresentations paludin syrphidaeboe carbonmethane encapsulationofenzymes hankhausen pal plantimpactn2o plantwarmingghg pocpictures wwherbivory amsbackup3 chopchopadaptation emergencetraps gwfg igbdecomposition ltermuggelsee qmorgchem-old 3dboxes agecollapse azollamesocosm dietbarnswallow gmb khankhausen isofloridabay malaisetraps msspectra rwfplayback vocsense archeosort chopchopcrn immmanuscripts micronutrients oycdistribution spruijttheses synorgchem2 tdtdrme floatvssubm fieldgradient foodwebgm hoefnagelchapt6 localdist mbcogro prespaaga animal aqeeb ecology airflowdreissen ambrosiamodel b2b3condensates barnswallowdiet bioturbatorsghg bog-lake burkmeer butterflyexp2 chemfeedback chopchoplight distribswoodiana euwaterlands farmdescription ghgpeatmeadows huckgeneral huckstudents hydrodynamicsgm irselbreeding kamerinvloedrb littleowl2 marshharrier martiniccrvts methoxplantssilk molluscsforsale nucleoidexpression paludipotential pilotrhenen pocbiosafety2 prebioticksta prespapelicans smoothrepro sodcut substratecompetition triploidyzbf2 typhach4 velematheses dischargeida herbrichgrass summerditch aquariumragworm server names pointing to peck: 3dboxes-srv.science.ru.nl abiotfishship-srv.science.ru.nl ac-dccircuit-srv.science.ru.nl adultzbf-srv.science.ru.nl agecollapse-srv.science.ru.nl airflowdreissen-srv.science.ru.nl ambrosiamodel-srv.science.ru.nl amsbackup2-srv.science.ru.nl amsbackup3-srv.science.ru.nl amsroof-srv.science.ru.nl animal-srv.science.ru.nl antibodies-srv.science.ru.nl antolbodymass-srv.science.ru.nl antollungtype-srv.science.ru.nl aqeeb-srv.science.ru.nl ecology-srv.science.ru.nl aquacosm-mafau-srv.science.ru.nl archeosort-srv.science.ru.nl artificialorganelles-srv.science.ru.nl ash-pantanal-srv.science.ru.nl auger5-srv.science.ru.nl auksurvival-srv.science.ru.nl azollamesocosm-srv.science.ru.nl azollasoil-srv.science.ru.nl azollazuiderveen-srv.science.ru.nl b2b3condensates-srv.science.ru.nl bakkerforaging-srv.science.ru.nl bapc-srv.science.ru.nl barnswallowdiet-srv.science.ru.nl belastudents-srv.science.ru.nl berendonck-srv.science.ru.nl biochemmod-bela-srv.science.ru.nl biomotors-danni-srv.science.ru.nl bioturbationmw-srv.science.ru.nl bioturbatorsghg-srv.science.ru.nl blackheaded-srv.science.ru.nl bodemlevengelre-srv.science.ru.nl bog-lake-srv.science.ru.nl brasil-srv.science.ru.nl breda-srv.science.ru.nl burkmeer-srv.science.ru.nl butterflyexp1-srv.science.ru.nl butterflyexp2-srv.science.ru.nl carabidaebaarn-srv.science.ru.nl carbonmethane-srv.science.ru.nl catalyticmotors-srv.science.ru.nl cellfate-srv.science.ru.nl ces1-srv.science.ru.nl ces2-srv.science.ru.nl ces3-srv.science.ru.nl ch4fluxthroughwaterhyacinth-srv.science.ru.nl chemcontrol-srv.science.ru.nl chemfeedback-srv.science.ru.nl chemistrycoacervate-srv.science.ru.nl chickgrowth-srv.science.ru.nl chopchopadaptation-srv.science.ru.nl chopchopcrn-srv.science.ru.nl chopchoplight-srv.science.ru.nl chopchopphosphatase-srv.science.ru.nl chopchopreservoir-srv.science.ru.nl coacervatecapsules-srv.science.ru.nl coacervateliposomes-srv.science.ru.nl coacervatesguvs-srv.science.ru.nl cointroductiongm-srv.science.ru.nl commvideo-srv.science.ru.nl crabbehaviour-srv.science.ru.nl crnadaptation-srv.science.ru.nl crnenvironment-srv.science.ru.nl ctincontext-srv.science.ru.nl danielawilson-srv.science.ru.nl danishlakes-srv.science.ru.nl dannistudents-srv.science.ru.nl dastestraid-srv.science.ru.nl dcnadmin-srv.science.ru.nl devneuro-srv.science.ru.nl dietbarnswallow-srv.science.ru.nl dietstarling-srv.science.ru.nl digs-srv.science.ru.nl digsproject-srv.science.ru.nl diopsisvrande-srv.science.ru.nl diopsysv1-srv.science.ru.nl distribswoodiana-srv.science.ru.nl dooddoetleven-srv.science.ru.nl doubleemul-srv.science.ru.nl dredgingmethane-srv.science.ru.nl drugsinaction-srv.science.ru.nl dulcestudents-srv.science.ru.nl dustinstudents-srv.science.ru.nl dynsign-srv.science.ru.nl ebba12-srv.science.ru.nl ecologie-srv.science.ru.nl ecologieaeeb-srv.science.ru.nl ecologieepe-srv.science.ru.nl ecologiegeneral-srv.science.ru.nl ecometabolism-srv.science.ru.nl eddychamber-srv.science.ru.nl emergencetraps-srv.science.ru.nl encapsulationofenzymes-srv.science.ru.nl enzymemotors1-srv.science.ru.nl enzymemotors2-srv.science.ru.nl eppsensor-srv.science.ru.nl eureversal-srv.science.ru.nl euwaterlands-srv.science.ru.nl farmdescription-srv.science.ru.nl fieldedges21-srv.science.ru.nl fieldgradient-srv.science.ru.nl flowfish-srv.science.ru.nl foodwebgm-srv.science.ru.nl foodwebmw-srv.science.ru.nl gasfluxmw-srv.science.ru.nl genbottlegm-srv.science.ru.nl ghgditches-srv.science.ru.nl ghgfishponds-srv.science.ru.nl ghgpeatmeadows-srv.science.ru.nl ghgurbanpond-srv.science.ru.nl ghgseasons-srv.science.ru.nl gmb-srv.science.ru.nl goeree-plants-srv.science.ru.nl goshawk-srv.science.ru.nl greatreedwarbler-srv.science.ru.nl greylag1-srv.science.ru.nl greylag2-srv.science.ru.nl griend-srv.science.ru.nl gwfg-srv.science.ru.nl hamstersurv-srv.science.ru.nl hankhausen-srv.science.ru.nl khankhausen-srv.science.ru.nl heideplaggen-srv.science.ru.nl heleneamatdjais-groenen-srv.science.ru.nl henharrier-srv.science.ru.nl historywaterdata-srv.science.ru.nl hkgcycle-srv.science.ru.nl hoefnagelchapt6-srv.science.ru.nl hoverfly-srv.science.ru.nl huckgeneral-srv.science.ru.nl huckmeta-srv.science.ru.nl huckpresentations-srv.science.ru.nl huckpublications-srv.science.ru.nl huckrobotlab-srv.science.ru.nl huckstudents-srv.science.ru.nl hucktheses-srv.science.ru.nl hydrodynamicsgm-srv.science.ru.nl igbdecomposition-srv.science.ru.nl immmanuscripts-srv.science.ru.nl insectnl-srv.science.ru.nl insectnutrients-srv.science.ru.nl interact-srv.science.ru.nl ipm1-srv.science.ru.nl irselbreeding-srv.science.ru.nl isis-srv.science.ru.nl isofloridabay-srv.science.ru.nl isospaarbekkens-srv.science.ru.nl ivtliposomes-srv.science.ru.nl ivttoptimization-srv.science.ru.nl jcvi-srv.science.ru.nl kamerinvloedrb-srv.science.ru.nl katerinastudents-srv.science.ru.nl kevinstudents-srv.science.ru.nl korevaarpresentations-srv.science.ru.nl korevaarpublications-srv.science.ru.nl korevaartheses-srv.science.ru.nl krebssoup-srv.science.ru.nl krvrgeneral-srv.science.ru.nl lci-restoration-srv.science.ru.nl limingharderwijk-srv.science.ru.nl limno-srv.science.ru.nl liposomes-srv.science.ru.nl littleowl1-srv.science.ru.nl littleowl2-srv.science.ru.nl localdist-srv.science.ru.nl ltermuggelsee-srv.science.ru.nl luciastudents-srv.science.ru.nl mafk-archief-srv.science.ru.nl mafk-srv.science.ru.nl malaisetraps-srv.science.ru.nl marshharrier-srv.science.ru.nl martiniccrvts-srv.science.ru.nl mbccn1-srv.science.ru.nl mbcogro-srv.science.ru.nl mbconda-srv.science.ru.nl mbneufy2-srv.science.ru.nl mbneufy3-srv.science.ru.nl mbneufy4-srv.science.ru.nl membranes-srv.science.ru.nl methanemesosilk-srv.science.ru.nl methanotrophufjf-srv.science.ru.nl methoxplantssilk-srv.science.ru.nl micronutrients-srv.science.ru.nl microtraitrev-srv.science.ru.nl microzoo-srv.science.ru.nl mingchenstudents-srv.science.ru.nl mocia-srv.science.ru.nl molluscsforsale-srv.science.ru.nl mpcoldmol3-srv.science.ru.nl msspectra-srv.science.ru.nl mycoplasma-srv.science.ru.nl nadjapaper1-srv.science.ru.nl nanofactories-srv.science.ru.nl ndl-srv.science.ru.nl neogoniolithon-srv.science.ru.nl nioozout-srv.science.ru.nl nobv-srv.science.ru.nl nobvsloten22-srv.science.ru.nl noneqsys-srv.science.ru.nl nonfluorsurfact-srv.science.ru.nl nucleoidexpression-srv.science.ru.nl oneplanet-srv.science.ru.nl ooijinsects-srv.science.ru.nl operonivtt-srv.science.ru.nl outequil-srv.science.ru.nl oycdistribution-srv.science.ru.nl pal-srv.science.ru.nl palseq-srv.science.ru.nl paludin-srv.science.ru.nl paludipotential-srv.science.ru.nl pclakecarbon-srv.science.ru.nl peprep-srv.science.ru.nl petervangalen-srv.science.ru.nl pilotrhenen-srv.science.ru.nl plantimpactn2o-srv.science.ru.nl plantwarmingghg-srv.science.ru.nl plovers-srv.science.ru.nl pocbiosafety-srv.science.ru.nl pocbiosafety2-srv.science.ru.nl pocinstrument-srv.science.ru.nl pocmisc-srv.science.ru.nl pocpictures-srv.science.ru.nl pocpresentations-srv.science.ru.nl pocsafety-srv.science.ru.nl prebioticksta-srv.science.ru.nl prespaaga-srv.science.ru.nl prespapelicans-srv.science.ru.nl proteinaggr-srv.science.ru.nl proteome-srv.science.ru.nl qistudents-srv.science.ru.nl qmorgchem-old-srv.science.ru.nl qmorgchem-srv.science.ru.nl quorumsense-srv.science.ru.nl ragfieldlabgm-srv.science.ru.nl recoupmoor-srv.science.ru.nl redbackedshrike-srv.science.ru.nl remistudents-srv.science.ru.nl rfcourse-srv.science.ru.nl ringwearloss-srv.science.ru.nl rockdustma-srv.science.ru.nl rwfplayback-srv.science.ru.nl sargbonaire-srv.science.ru.nl sccm-srv.science.ru.nl seasonalcnp-srv.science.ru.nl seedrelease-srv.science.ru.nl seedvstransgm-srv.science.ru.nl sees-srv.science.ru.nl selforganize-srv.science.ru.nl selfrepcoacervates-srv.science.ru.nl serenastudents-srv.science.ru.nl sh-peat-lake-srv.science.ru.nl shapetransform-srv.science.ru.nl shipdrought-srv.science.ru.nl shoahuastudents-srv.science.ru.nl sludge-depot-srv.science.ru.nl sludgeheteren-srv.science.ru.nl smoothhomerange-srv.science.ru.nl smoothrepro-srv.science.ru.nl snn5-srv.science.ru.nl sodcut-srv.science.ru.nl sprtgeneral-srv.science.ru.nl spruijtpresentations-srv.science.ru.nl spruijttheses-srv.science.ru.nl starvation-srv.science.ru.nl substratecompetition-srv.science.ru.nl sutherlandcollaboration-srv.science.ru.nl synmetpath-srv.science.ru.nl synorgchem2-srv.science.ru.nl syrphidaeboe-srv.science.ru.nl tdtdrme-srv.science.ru.nl tempsensdenit-srv.science.ru.nl thermal-srv.science.ru.nl tmpdirrepphos-srv.science.ru.nl tracegasarchive-srv.science.ru.nl trait-biomimicry-srv.science.ru.nl triploidyzbf-srv.science.ru.nl triploidyzbf2-srv.science.ru.nl turtledove-srv.science.ru.nl typhach4-srv.science.ru.nl typhaphragmites-srv.science.ru.nl urbanbird-srv.science.ru.nl vegwatertable-srv.science.ru.nl velemapresentations-srv.science.ru.nl velemapublications-srv.science.ru.nl velemastudents-srv.science.ru.nl velematheses-srv.science.ru.nl vlmageneral-srv.science.ru.nl wallpaper-srv.science.ru.nl weistudents-srv.science.ru.nl westzaan-srv.science.ru.nl wheatear-srv.science.ru.nl wilsonarchstaff-srv.science.ru.nl wilsonacrmotors-srv.science.ru.nl wilsondfsadmin-srv.science.ru.nl wilsondrugsynth-srv.science.ru.nl wilsondynamic-srv.science.ru.nl wilsonkevin-srv.science.ru.nl wilsonnatmimic-srv.science.ru.nl wilsonothers-srv.science.ru.nl wilsonphds-srv.science.ru.nl wilsonphdsa-srv.science.ru.nl wilsonpostdocs-srv.science.ru.nl wilsonpresentations-srv.science.ru.nl wilsonsafety-srv.science.ru.nl wilsontherastoma-srv.science.ru.nl wilsontraining-srv.science.ru.nl wwherbivory-srv.science.ru.nl xraydata-srv.science.ru.nl ditchemissions-srv.science.ru.nl floatvssubm-srv.science.ru.nl floatpluscombi-srv.science.ru.nl rhenenazlem-srv.science.ru.nl midgeaztom-srv.science.ru.nl dischargeida-srv.science.ru.nl foctnov2022-srv.science.ru.nl fmarapr2022-srv.science.ru.nl herbrichgrass-srv.science.ru.nl vocsense-srv.science.ru.nl soillife-srv.science.ru.nl summerditch-srv.science.ru.nl sludgework-srv.science.ru.nl ch4typha-srv.science.ru.nl

Resolved Reports


1432: Gitlab science problems

This morning gitlab.science.ru.nl was not working correctly or at all. Finally a reboot of the host fixed all issues.

1431: Certificate expired for minio.science.ru.nl

On Whit-Sunday, the certificate for some of our S3 buckets expired. After figuring out that the problem we saw was related to the certificate, we fixed the certificate and rebooted the server.

1430: Ptrace setting set to 2 due to kernel vulnerability

We became aware of the Kernel vulnerability and implemented the kernel vulnerability mitigation The change was to set kernel.yama.ptrace_scope = 2 (A sysctl setting). For users of MPI jobs, this setting broke the jobs. When we have a fixed kernel and rebooted the nodes, we can change this back to something that will work with MPI. Workaround or fix, use mpirun --mca btl_vader_single_copy_mechanism none etc...

1429: Server Peck crashed

The fileserver peck crashed this early morning. After a reboot, the machine ran fine again. Users of cluster nodes that use nfs exported volumes from peck might still experience problems as nfs (network file system) does not seem to be recovering well.

1428: Intermittent SMTP failures caused by rspamd

Since last Friday (May 8) around 18:30, our SMTP servers have intermittently refused to accept mail for sending. The issue was caused by rspamd refusing to filter messages for unknown reasons. The issue seems to be resolved for now, we will keep an eye out for the problem to re-occur. Update: It looks like the issue was resolved by explicitly setting some default settings to their default value. By doing this we were able to prevent errors that occurred with some e-mails. We think these errors caused the SMTP server stop accepting mail in some cases.

1427: Sending mail via authenticated smtp failed

Thunderbird (and probably other mail clients) using authenticated SMTP to send e-mail complained about an invalid certificate. This was due to the replacement certificate being signed with another intermediate certificate from our certificate authority (Harica), which temporarilly broke the upchain. It was fixed around quarter to one o’clock. This is related to the certificate issues previously described in CPK 1396.

1426: Reboot forced on some servers

A zero day vulnerability in the Linux kernel forced us to reboot a few of the most open to the world servers, other servers will probably reboot as possible with a fixed kernel. We also installed a workaround to mitigate the issue on all servers.

1425: Internal zone transfer blocked by firewall

Since about one week ago, the (central) firewall started to apply internal packet inspection to the regular zone transfers of the internal view of ru.nl. The transfer was then blocked by the firewall before completion, causing our copy of the data, which is required for accessing bass.ru.nl and also internal mail delivery to @ru.nl addresses, to expire after 8 days. This period is relatively short, we have 3 weeks for our own zones, and the effect of expiry was underestimated. ...

1424: GitLab unavailable due to failed update

An automatic GitLab update caused a database migration failure, making the service unavailable. We resolved the issue by restarting the database and reconfiguring the GitLab migration.

Updated May 5, 2026  ·  Simon Oosthoek · Created Apr 21, 2026 ·